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docs: updating tutorial for ismb#469

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agitter merged 23 commits into
Reed-CompBio:mainfrom
ntalluri:tutorial-update
Jun 18, 2026
Merged

docs: updating tutorial for ismb#469
agitter merged 23 commits into
Reed-CompBio:mainfrom
ntalluri:tutorial-update

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@ntalluri

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My current plan is to update the intermediate code to include evaluation / parameter selection. I will be leaving parameter tuning in the advanced capabilities section. I will also be editing the tutorial based on the comments from when Tony I presented at COMBINE.

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Documentation build overview

📚 spras | 🛠️ Build #33203343 | 📁 Comparing c8cdf82 against latest (87b314c)

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4 files changed
± tutorial/advanced.html
± tutorial/beginner.html
± tutorial/intermediate.html
± tutorial/introduction.html

@tristan-f-r tristan-f-r added the documentation Improvements or additions to documentation label Apr 25, 2026
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Still need to add the information about running dev containers, but other than that, everything else is ready.

@ntalluri ntalluri marked this pull request as ready for review May 22, 2026 19:37
@ntalluri ntalluri requested review from agitter and annaritz May 22, 2026 19:37
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ntalluri and others added 4 commits May 28, 2026 16:53
Co-authored-by: Anthony Gitter <agitter@users.noreply.github.com>
@ntalluri ntalluri requested a review from agitter May 28, 2026 22:36

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This is just about ready. A few more minor comments.

Comment thread docs/_static/config/intermediate.yaml Outdated
Comment thread docs/tutorial/introduction.rst Outdated
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Comment thread docs/tutorial/introduction.rst Outdated
Co-authored-by: Anthony Gitter <agitter@users.noreply.github.com>
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Updated the tutorial based on the review, this is ready to merge.

@ntalluri ntalluri requested a review from agitter June 18, 2026 15:36
@agitter agitter merged commit 821a77a into Reed-CompBio:main Jun 18, 2026
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3 participants